Variant report

Variant	rs62335523
Chromosome Location	chr4:128063987-128063988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128061832..128064365-chr4:128065851..128068645,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1000707	0.86[EUR][1000 genomes]
rs10012435	0.86[EUR][1000 genomes]
rs10518518	0.86[EUR][1000 genomes]
rs11098914	0.86[EUR][1000 genomes]
rs11098915	0.86[EUR][1000 genomes]
rs11098916	0.86[EUR][1000 genomes]
rs11098917	0.86[EUR][1000 genomes]
rs13116630	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1351425	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1351426	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383520	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1480897	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1480910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17213081	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17228715	0.86[EUR][1000 genomes]
rs17228756	0.86[EUR][1000 genomes]
rs17228875	0.86[EUR][1000 genomes]
rs17229246	0.86[EUR][1000 genomes]
rs17229576	0.84[EUR][1000 genomes]
rs17278402	0.88[ASN][1000 genomes]
rs17291337	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17293310	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17293345	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17293359	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17294432	0.86[EUR][1000 genomes]
rs17294586	0.86[EUR][1000 genomes]
rs17294663	0.86[EUR][1000 genomes]
rs17295431	0.83[EUR][1000 genomes]
rs28524825	0.86[EUR][1000 genomes]
rs34120215	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4550943	0.86[EUR][1000 genomes]
rs4550946	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55773382	0.85[EUR][1000 genomes]
rs55824976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56216620	0.86[EUR][1000 genomes]
rs56387802	0.86[EUR][1000 genomes]
rs62333871	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62333879	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333900	0.86[EUR][1000 genomes]
rs62333901	0.86[EUR][1000 genomes]
rs62333902	0.86[EUR][1000 genomes]
rs62333903	0.86[EUR][1000 genomes]
rs62333904	0.86[EUR][1000 genomes]
rs62333905	0.86[EUR][1000 genomes]
rs62333906	0.86[EUR][1000 genomes]
rs62333907	0.86[EUR][1000 genomes]
rs62333908	0.86[EUR][1000 genomes]
rs62335164	0.84[EUR][1000 genomes]
rs62335485	0.90[ASN][1000 genomes]
rs62335489	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62335528	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810678	0.86[EUR][1000 genomes]
rs6836252	0.83[EUR][1000 genomes]
rs6836483	0.86[EUR][1000 genomes]
rs6853523	0.86[EUR][1000 genomes]
rs6857872	0.86[EUR][1000 genomes]
rs6857937	0.86[EUR][1000 genomes]
rs6858838	0.86[EUR][1000 genomes]
rs72680008	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680022	0.86[EUR][1000 genomes]
rs7655646	0.82[EUR][1000 genomes]
rs7694318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs976814	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998857	0.86[EUR][1000 genomes]
rs998858	0.86[EUR][1000 genomes]
rs999285	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128061000-128065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128061200-128064000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:128061200-128067800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:128062400-128064000	Enhancers	NHDF-Ad	bronchial
5	chr4:128062600-128064200	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:128062600-128066000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:128062600-128066800	Enhancers	HSMMtube	muscle
8	chr4:128062600-128067000	Enhancers	HSMM	muscle
9	chr4:128062800-128064000	Enhancers	NHLF	lung
10	chr4:128063200-128066200	Weak transcription	Adipose Nuclei	Adipose
11	chr4:128063600-128064200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:128063600-128064400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:128063600-128064400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:128063600-128064600	Weak transcription	NH-A	brain
15	chr4:128063800-128064000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:128063800-128065400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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