Variant report

Variant	rs17229246
Chromosome Location	chr4:128138550-128138551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128131027..128132632-chr4:128136404..128139237,2	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1000707	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012435	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518518	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098914	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098915	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098916	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098917	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722995	0.92[ASN][1000 genomes]
rs11731344	0.92[ASN][1000 genomes]
rs12647820	0.94[ASN][1000 genomes]
rs12647867	0.92[ASN][1000 genomes]
rs13116918	0.92[ASN][1000 genomes]
rs13124828	0.92[ASN][1000 genomes]
rs1351425	0.87[EUR][1000 genomes]
rs1351426	0.88[EUR][1000 genomes]
rs1383520	0.85[EUR][1000 genomes]
rs1443064	0.85[ASN][1000 genomes]
rs1443065	0.91[ASN][1000 genomes]
rs1443066	0.91[ASN][1000 genomes]
rs1480897	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480909	0.86[EUR][1000 genomes]
rs1480910	0.85[EUR][1000 genomes]
rs1550626	0.91[ASN][1000 genomes]
rs17228715	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228756	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228875	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229576	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17291337	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17293310	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17293345	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17293359	0.90[EUR][1000 genomes]
rs17294432	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294586	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294663	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295431	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992516	0.91[ASN][1000 genomes]
rs28524825	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240281	0.91[ASN][1000 genomes]
rs4550943	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550946	0.88[EUR][1000 genomes]
rs4574426	0.96[ASN][1000 genomes]
rs4834186	0.91[ASN][1000 genomes]
rs4997057	0.91[ASN][1000 genomes]
rs55773382	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824976	0.86[EUR][1000 genomes]
rs56216620	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56387802	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333871	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62333879	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333900	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333901	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333902	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333903	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333904	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333905	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333906	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333907	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333908	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62335164	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62335523	0.86[EUR][1000 genomes]
rs62335528	0.88[EUR][1000 genomes]
rs6810678	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836252	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6836483	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853523	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857872	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857937	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858838	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680008	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680022	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744559	0.93[ASN][1000 genomes]
rs7655646	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666038	0.92[ASN][1000 genomes]
rs7687004	0.82[ASN][1000 genomes]
rs7694318	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9284641	0.92[ASN][1000 genomes]
rs967532	0.91[ASN][1000 genomes]
rs967533	0.91[ASN][1000 genomes]
rs976814	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998857	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998858	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999285	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997843	0.96[ASN][1000 genomes]
rs9999648	0.81[CHB][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128135600-128138600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:128136000-128140400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:128136200-128138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:128138000-128141000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:128138400-128139000	Enhancers	Adipose Nuclei	Adipose

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