Variant report

Variant	rs62333879
Chromosome Location	chr4:128104940-128104941
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1000707	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10012435	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10518518	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098914	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098915	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098916	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11098917	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12647820	0.80[ASN][1000 genomes]
rs13116630	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1351425	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1351426	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1383520	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1480897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480909	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1480910	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17213081	0.96[AFR][1000 genomes]
rs17228715	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17228756	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17228875	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17229246	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17229576	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17291337	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17293310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17293345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17293359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17294432	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17294586	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17294663	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17295431	0.90[EUR][1000 genomes]
rs28524825	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34120215	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4550943	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4550946	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4574426	0.82[ASN][1000 genomes]
rs55773382	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55824976	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56216620	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56387802	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333871	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62333900	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333901	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333902	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333903	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333904	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333905	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333906	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333907	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333908	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62335164	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62335489	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62335523	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62335528	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810678	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6836252	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6836483	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6853523	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857872	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857937	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6858838	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72680008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72680022	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs744559	0.85[ASN][1000 genomes]
rs7655646	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7694318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998857	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998858	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs999285	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9997843	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128104600-128105400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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