Variant report

Variant	rs1480897
Chromosome Location	chr4:128103242-128103243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1000707	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10012435	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10518518	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098914	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098915	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11098916	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11098917	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12647820	0.80[ASN][1000 genomes]
rs13116630	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1351425	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1351426	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1383520	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1480909	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1480910	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17213081	0.96[AFR][1000 genomes]
rs17228715	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17228756	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17228875	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17229246	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17229576	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17291337	0.96[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17293310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17293345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17293359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17294432	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17294586	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17294663	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17295431	0.89[EUR][1000 genomes]
rs28524825	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34120215	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4550943	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4550946	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4574426	0.82[ASN][1000 genomes]
rs55773382	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55824976	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56216620	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56387802	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333871	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62333879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333900	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333901	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333902	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333903	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333904	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333905	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333906	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333907	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333908	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62335164	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62335489	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62335523	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62335528	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810678	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6836252	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6836483	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6853523	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857872	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6857937	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6858838	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72680008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72680022	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs744559	0.85[ASN][1000 genomes]
rs7655646	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7694318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998857	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998858	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs999285	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9997843	0.82[ASN][1000 genomes]
rs9999648	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128102200-128104400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:128102800-128104400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:128102800-128104400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links