Variant report

Variant	rs744559
Chromosome Location	chr4:128117298-128117299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1000707	0.93[ASN][1000 genomes]
rs10012435	0.93[ASN][1000 genomes]
rs10019793	0.93[EUR][1000 genomes]
rs10020400	0.87[EUR][1000 genomes]
rs10518518	0.93[ASN][1000 genomes]
rs11098914	0.93[ASN][1000 genomes]
rs11098915	0.93[ASN][1000 genomes]
rs11098916	0.89[ASN][1000 genomes]
rs11098917	0.93[ASN][1000 genomes]
rs11722995	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11731344	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11934978	0.94[EUR][1000 genomes]
rs12498324	0.93[EUR][1000 genomes]
rs12507297	0.93[EUR][1000 genomes]
rs12647820	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12647867	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13116918	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13124828	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13145752	0.94[EUR][1000 genomes]
rs1351425	0.80[ASN][1000 genomes]
rs1351426	0.80[ASN][1000 genomes]
rs1443061	0.85[EUR][1000 genomes]
rs1443064	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1443065	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1443066	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1480897	0.85[ASN][1000 genomes]
rs1550626	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1596282	0.81[EUR][1000 genomes]
rs17228715	0.93[ASN][1000 genomes]
rs17228756	0.93[ASN][1000 genomes]
rs17228875	0.93[ASN][1000 genomes]
rs17229246	0.93[ASN][1000 genomes]
rs17229576	0.91[ASN][1000 genomes]
rs17293310	0.84[ASN][1000 genomes]
rs17293345	0.84[ASN][1000 genomes]
rs17293359	0.80[ASN][1000 genomes]
rs17294432	0.93[ASN][1000 genomes]
rs17294586	0.93[ASN][1000 genomes]
rs17294663	0.93[ASN][1000 genomes]
rs17295431	0.87[ASN][1000 genomes]
rs1992516	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2218321	0.80[EUR][1000 genomes]
rs28524825	0.93[ASN][1000 genomes]
rs4240281	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4550943	0.93[ASN][1000 genomes]
rs4574426	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4574427	0.92[EUR][1000 genomes]
rs4833373	0.87[EUR][1000 genomes]
rs4834186	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4997057	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55773382	0.93[ASN][1000 genomes]
rs56216620	0.93[ASN][1000 genomes]
rs56387802	0.93[ASN][1000 genomes]
rs62333871	0.84[ASN][1000 genomes]
rs62333879	0.85[ASN][1000 genomes]
rs62333900	0.93[ASN][1000 genomes]
rs62333901	0.93[ASN][1000 genomes]
rs62333902	0.93[ASN][1000 genomes]
rs62333903	0.93[ASN][1000 genomes]
rs62333904	0.93[ASN][1000 genomes]
rs62333905	0.93[ASN][1000 genomes]
rs62333906	0.93[ASN][1000 genomes]
rs62333907	0.93[ASN][1000 genomes]
rs62333908	0.93[ASN][1000 genomes]
rs62335164	0.91[ASN][1000 genomes]
rs62335528	0.80[ASN][1000 genomes]
rs6810678	0.93[ASN][1000 genomes]
rs6820610	0.93[EUR][1000 genomes]
rs6836252	0.89[ASN][1000 genomes]
rs6836483	0.93[ASN][1000 genomes]
rs6853523	0.93[ASN][1000 genomes]
rs6857872	0.93[ASN][1000 genomes]
rs6857937	0.93[ASN][1000 genomes]
rs6858838	0.93[ASN][1000 genomes]
rs72680008	0.87[ASN][1000 genomes]
rs72680022	0.93[ASN][1000 genomes]
rs7655646	0.89[ASN][1000 genomes]
rs7666038	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7666301	0.81[EUR][1000 genomes]
rs7687004	0.82[ASN][1000 genomes]
rs7694318	0.87[ASN][1000 genomes]
rs9284641	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967532	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs967533	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs976814	0.85[ASN][1000 genomes]
rs998857	0.93[ASN][1000 genomes]
rs998858	0.93[ASN][1000 genomes]
rs999285	0.93[ASN][1000 genomes]
rs9997843	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9999648	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128116800-128118000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:128117000-128117800	Weak transcription	Gastric	stomach
3	chr4:128117000-128118600	Enhancers	Fetal Stomach	stomach

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