Variant report

Variant	rs2218321
Chromosome Location	chr4:128215509-128215510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10019793	0.84[EUR][1000 genomes]
rs10020400	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11722995	0.86[EUR][1000 genomes]
rs11731344	0.86[EUR][1000 genomes]
rs11934978	0.85[EUR][1000 genomes]
rs12498324	0.84[EUR][1000 genomes]
rs12507297	0.84[EUR][1000 genomes]
rs12647820	0.87[EUR][1000 genomes]
rs12647867	0.86[EUR][1000 genomes]
rs13116918	0.81[EUR][1000 genomes]
rs13124828	0.86[EUR][1000 genomes]
rs13145752	0.85[EUR][1000 genomes]
rs1372965	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1443061	0.92[EUR][1000 genomes]
rs1443062	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1596282	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1838032	0.82[EUR][1000 genomes]
rs1899548	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1992516	0.85[EUR][1000 genomes]
rs2120088	0.81[EUR][1000 genomes]
rs4435756	0.81[EUR][1000 genomes]
rs4574426	0.81[EUR][1000 genomes]
rs4574427	0.83[EUR][1000 genomes]
rs4574428	0.82[EUR][1000 genomes]
rs4833373	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4834186	0.86[EUR][1000 genomes]
rs4997057	0.85[EUR][1000 genomes]
rs6817032	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6820610	0.84[EUR][1000 genomes]
rs744559	0.80[EUR][1000 genomes]
rs7666038	0.86[EUR][1000 genomes]
rs7666301	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7686939	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs894532	0.81[EUR][1000 genomes]
rs9284641	0.86[EUR][1000 genomes]
rs960588	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs967534	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9997843	0.81[EUR][1000 genomes]
rs9998370	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999648	0.96[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128215000-128215600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:128215200-128215600	Enhancers	Spleen	Spleen
3	chr4:128215200-128215800	Enhancers	Adipose Nuclei	Adipose
4	chr4:128215400-128216600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links