Variant report

Variant	rs1899548
Chromosome Location	chr4:128167093-128167094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10019793	0.87[ASN][1000 genomes]
rs10020400	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11722995	0.82[EUR][1000 genomes]
rs11731344	0.82[EUR][1000 genomes]
rs11934978	0.87[ASN][1000 genomes]
rs12498324	0.87[ASN][1000 genomes]
rs12507297	0.87[ASN][1000 genomes]
rs12647820	0.80[EUR][1000 genomes]
rs12647867	0.81[EUR][1000 genomes]
rs13124828	0.81[EUR][1000 genomes]
rs13145752	0.87[ASN][1000 genomes]
rs1443062	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443064	0.91[EUR][1000 genomes]
rs1443065	0.91[EUR][1000 genomes]
rs1443066	0.91[EUR][1000 genomes]
rs1550626	0.90[EUR][1000 genomes]
rs1596282	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1838032	0.87[EUR][1000 genomes]
rs1899547	0.94[EUR][1000 genomes]
rs1992516	0.81[EUR][1000 genomes]
rs2120088	0.92[EUR][1000 genomes]
rs2218321	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35327125	0.89[EUR][1000 genomes]
rs4240281	0.89[EUR][1000 genomes]
rs4306972	0.91[EUR][1000 genomes]
rs4435756	0.93[EUR][1000 genomes]
rs4574427	0.87[ASN][1000 genomes]
rs4574428	0.87[EUR][1000 genomes]
rs4833373	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4834186	0.82[EUR][1000 genomes]
rs4997057	0.80[EUR][1000 genomes]
rs6817032	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6820610	0.87[ASN][1000 genomes]
rs7666038	0.81[EUR][1000 genomes]
rs7666301	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7686939	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7687004	0.93[EUR][1000 genomes]
rs7687516	0.89[EUR][1000 genomes]
rs894532	0.93[EUR][1000 genomes]
rs9284641	0.82[EUR][1000 genomes]
rs960588	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs967532	0.90[EUR][1000 genomes]
rs967533	0.90[EUR][1000 genomes]
rs967534	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9998370	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128162600-128170000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128166800-128167400	Enhancers	Adipose Nuclei	Adipose
3	chr4:128167000-128167400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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