Variant report

Variant	rs2120088
Chromosome Location	chr4:128182107-128182108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10020400	0.80[EUR][1000 genomes]
rs11722995	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11731344	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12647820	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12647867	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13122922	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13124828	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1348358	0.84[EUR][1000 genomes]
rs1443061	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443062	0.90[EUR][1000 genomes]
rs1443064	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1443065	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1443066	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1550626	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1584019	0.89[ASN][1000 genomes]
rs1596282	0.82[EUR][1000 genomes]
rs17229576	0.80[ASN][1000 genomes]
rs17295431	0.80[ASN][1000 genomes]
rs1838032	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1899547	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1899548	0.92[EUR][1000 genomes]
rs1992516	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2218321	0.81[EUR][1000 genomes]
rs35327125	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4240281	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4306972	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4435756	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4574426	0.82[ASN][1000 genomes]
rs4574428	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4834186	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4997057	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62335164	0.80[ASN][1000 genomes]
rs6817032	0.90[EUR][1000 genomes]
rs7655646	0.82[ASN][1000 genomes]
rs7666038	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7666301	0.83[EUR][1000 genomes]
rs7686939	0.93[EUR][1000 genomes]
rs7687004	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7687516	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs894532	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284641	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs960588	0.91[EUR][1000 genomes]
rs967532	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs967533	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs967534	0.90[EUR][1000 genomes]
rs9997843	0.82[ASN][1000 genomes]
rs9998370	0.96[EUR][1000 genomes]
rs9999648	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128182000-128183200	Enhancers	HMEC	breast

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