Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1443061	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1443062	0.83[EUR][1000 genomes]
rs1443064	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1443065	0.81[EUR][1000 genomes]
rs1443066	0.82[EUR][1000 genomes]
rs1550626	0.83[EUR][1000 genomes]
rs1584019	0.85[ASN][1000 genomes]
rs1838032	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1899547	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2120088	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4240281	0.82[EUR][1000 genomes]
rs4306972	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4435756	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4574428	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6817032	0.82[EUR][1000 genomes]
rs7687004	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs894532	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs967532	0.83[EUR][1000 genomes]
rs967533	0.83[EUR][1000 genomes]
rs9999648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128226000-128229400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:128226600-128230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:128226600-128230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:128226600-128230400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:128226600-128230400	Weak transcription	NHDF-Ad	bronchial
6	chr4:128226600-128231000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:128226800-128228800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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