Variant report

Variant	rs1584019
Chromosome Location	chr4:128218423-128218424
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13122922	0.85[ASN][1000 genomes]
rs1443061	0.89[ASN][1000 genomes]
rs1443064	0.82[ASN][1000 genomes]
rs17229576	0.83[EUR][1000 genomes]
rs17230970	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17232998	0.86[AFR][1000 genomes]
rs17295431	0.83[EUR][1000 genomes]
rs1838032	0.93[ASN][1000 genomes]
rs1899547	0.85[ASN][1000 genomes]
rs2120088	0.89[ASN][1000 genomes]
rs4306972	0.89[ASN][1000 genomes]
rs4435756	0.89[ASN][1000 genomes]
rs4574428	0.93[ASN][1000 genomes]
rs62333901	0.83[AFR][1000 genomes]
rs62335164	0.83[EUR][1000 genomes]
rs7655646	0.82[EUR][1000 genomes]
rs7687004	0.86[ASN][1000 genomes]
rs894532	0.89[ASN][1000 genomes]
rs9999648	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128215600-128222600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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