Variant report

Variant	rs1443061
Chromosome Location	chr4:128229979-128229980
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10019793	0.83[EUR][1000 genomes]
rs10020400	0.89[EUR][1000 genomes]
rs11722995	0.93[EUR][1000 genomes]
rs11731344	0.93[EUR][1000 genomes]
rs11934978	0.84[EUR][1000 genomes]
rs12498324	0.83[EUR][1000 genomes]
rs12507297	0.83[EUR][1000 genomes]
rs12647820	0.93[EUR][1000 genomes]
rs12647867	0.93[EUR][1000 genomes]
rs13116918	0.87[EUR][1000 genomes]
rs13122922	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13124828	0.92[EUR][1000 genomes]
rs13145752	0.84[EUR][1000 genomes]
rs1372965	0.83[EUR][1000 genomes]
rs1443062	0.84[EUR][1000 genomes]
rs1443064	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1443065	0.83[EUR][1000 genomes]
rs1443066	0.83[EUR][1000 genomes]
rs1550626	0.83[EUR][1000 genomes]
rs1584019	0.89[ASN][1000 genomes]
rs1596282	0.93[EUR][1000 genomes]
rs1838032	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1899547	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1992516	0.92[EUR][1000 genomes]
rs2120088	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2218321	0.92[EUR][1000 genomes]
rs4240281	0.83[EUR][1000 genomes]
rs4306972	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4435756	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4574426	0.87[EUR][1000 genomes]
rs4574427	0.82[EUR][1000 genomes]
rs4574428	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4833373	0.87[EUR][1000 genomes]
rs4834186	0.93[EUR][1000 genomes]
rs4997057	0.91[EUR][1000 genomes]
rs6817032	0.84[EUR][1000 genomes]
rs6820610	0.83[EUR][1000 genomes]
rs744559	0.85[EUR][1000 genomes]
rs7666038	0.93[EUR][1000 genomes]
rs7666301	0.92[EUR][1000 genomes]
rs7687004	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs894532	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9284641	0.93[EUR][1000 genomes]
rs960588	0.81[EUR][1000 genomes]
rs967532	0.83[EUR][1000 genomes]
rs967533	0.83[EUR][1000 genomes]
rs9997843	0.87[EUR][1000 genomes]
rs9999648	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128226600-128230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:128226600-128230400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:128226600-128230400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:128226600-128230400	Weak transcription	NHDF-Ad	bronchial
5	chr4:128226600-128231000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:128228800-128231800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:128229400-128231600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:128229600-128230600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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