Variant report

Variant	rs4997057
Chromosome Location	chr4:128158126-128158127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128156891..128158963-chr4:128159166..128161627,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1000707	0.91[ASN][1000 genomes]
rs10012435	0.91[ASN][1000 genomes]
rs10019793	0.86[EUR][1000 genomes]
rs10020400	0.94[EUR][1000 genomes]
rs10518518	0.91[ASN][1000 genomes]
rs11098914	0.91[ASN][1000 genomes]
rs11098915	0.91[ASN][1000 genomes]
rs11098916	0.87[ASN][1000 genomes]
rs11098917	0.91[ASN][1000 genomes]
rs11722995	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11731344	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11934978	0.87[EUR][1000 genomes]
rs12498324	0.86[EUR][1000 genomes]
rs12507297	0.86[EUR][1000 genomes]
rs12647820	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12647867	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13116918	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13124828	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13145752	0.87[EUR][1000 genomes]
rs1443061	0.91[EUR][1000 genomes]
rs1443064	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1443065	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443066	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596282	0.85[EUR][1000 genomes]
rs17228715	0.91[ASN][1000 genomes]
rs17228756	0.91[ASN][1000 genomes]
rs17228875	0.91[ASN][1000 genomes]
rs17229246	0.91[ASN][1000 genomes]
rs17229576	0.92[ASN][1000 genomes]
rs17291337	1.00[JPT][hapmap]
rs17294432	0.91[ASN][1000 genomes]
rs17294586	0.91[ASN][1000 genomes]
rs17294663	0.91[ASN][1000 genomes]
rs17295431	0.92[ASN][1000 genomes]
rs1838032	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1899547	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1899548	0.80[EUR][1000 genomes]
rs1992516	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120088	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2218321	0.85[EUR][1000 genomes]
rs28524825	0.91[ASN][1000 genomes]
rs4240281	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4306972	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4435756	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4550943	0.91[ASN][1000 genomes]
rs4574426	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574427	0.85[EUR][1000 genomes]
rs4574428	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4833373	0.92[EUR][1000 genomes]
rs4834186	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55773382	0.91[ASN][1000 genomes]
rs56216620	0.91[ASN][1000 genomes]
rs56387802	0.91[ASN][1000 genomes]
rs62333900	0.91[ASN][1000 genomes]
rs62333901	0.91[ASN][1000 genomes]
rs62333902	0.91[ASN][1000 genomes]
rs62333903	0.91[ASN][1000 genomes]
rs62333904	0.91[ASN][1000 genomes]
rs62333905	0.91[ASN][1000 genomes]
rs62333906	0.91[ASN][1000 genomes]
rs62333907	0.91[ASN][1000 genomes]
rs62333908	0.91[ASN][1000 genomes]
rs62335164	0.92[ASN][1000 genomes]
rs6810678	0.91[ASN][1000 genomes]
rs6820610	0.86[EUR][1000 genomes]
rs6836252	0.87[ASN][1000 genomes]
rs6836483	0.91[ASN][1000 genomes]
rs6853523	0.91[ASN][1000 genomes]
rs6857872	0.91[ASN][1000 genomes]
rs6857937	0.91[ASN][1000 genomes]
rs6858838	0.91[ASN][1000 genomes]
rs72680008	0.81[ASN][1000 genomes]
rs72680022	0.91[ASN][1000 genomes]
rs744559	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7655646	0.94[ASN][1000 genomes]
rs7666038	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666301	0.85[EUR][1000 genomes]
rs7686939	0.81[EUR][1000 genomes]
rs7687004	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7694318	0.81[ASN][1000 genomes]
rs894532	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9284641	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs960588	0.83[EUR][1000 genomes]
rs967532	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967534	0.85[EUR][1000 genomes]
rs998857	0.91[ASN][1000 genomes]
rs998858	0.91[ASN][1000 genomes]
rs999285	0.91[ASN][1000 genomes]
rs9997843	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9999648	0.96[CEU][hapmap];0.90[CHB][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128151600-128160400	Weak transcription	Fetal Stomach	stomach
2	chr4:128157600-128162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:128157800-128159200	Enhancers	NHDF-Ad	bronchial
4	chr4:128157800-128160400	Enhancers	Fetal Lung	lung
5	chr4:128158000-128158200	Enhancers	Colon Smooth Muscle	Colon
6	chr4:128158000-128158200	Enhancers	Rectal Smooth Muscle	rectum

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