Variant report

Variant	rs4240281
Chromosome Location	chr4:128159903-128159904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128156891..128158963-chr4:128159166..128161627,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1000707	0.91[ASN][1000 genomes]
rs10012435	0.91[ASN][1000 genomes]
rs10020400	0.85[EUR][1000 genomes]
rs10518518	0.91[ASN][1000 genomes]
rs11098914	0.91[ASN][1000 genomes]
rs11098915	0.91[ASN][1000 genomes]
rs11098916	0.87[ASN][1000 genomes]
rs11098917	0.91[ASN][1000 genomes]
rs11722995	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11731344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12647820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12647867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13116918	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13122922	0.82[EUR][1000 genomes]
rs13124828	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1443061	0.83[EUR][1000 genomes]
rs1443062	0.89[EUR][1000 genomes]
rs1443064	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1443065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1550626	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228715	0.91[ASN][1000 genomes]
rs17228756	0.91[ASN][1000 genomes]
rs17228875	0.91[ASN][1000 genomes]
rs17229246	0.91[ASN][1000 genomes]
rs17229576	0.92[ASN][1000 genomes]
rs17294432	0.91[ASN][1000 genomes]
rs17294586	0.91[ASN][1000 genomes]
rs17294663	0.91[ASN][1000 genomes]
rs17295431	0.92[ASN][1000 genomes]
rs1838032	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1899547	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1899548	0.89[EUR][1000 genomes]
rs1992516	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120088	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28524825	0.91[ASN][1000 genomes]
rs35327125	0.88[EUR][1000 genomes]
rs4306972	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4435756	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4550943	0.91[ASN][1000 genomes]
rs4574426	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4574428	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4833373	0.83[EUR][1000 genomes]
rs4834186	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4997057	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55773382	0.91[ASN][1000 genomes]
rs56216620	0.91[ASN][1000 genomes]
rs56387802	0.91[ASN][1000 genomes]
rs62333900	0.91[ASN][1000 genomes]
rs62333901	0.91[ASN][1000 genomes]
rs62333902	0.91[ASN][1000 genomes]
rs62333903	0.91[ASN][1000 genomes]
rs62333904	0.91[ASN][1000 genomes]
rs62333905	0.91[ASN][1000 genomes]
rs62333906	0.91[ASN][1000 genomes]
rs62333907	0.91[ASN][1000 genomes]
rs62333908	0.91[ASN][1000 genomes]
rs62335164	0.92[ASN][1000 genomes]
rs6810678	0.91[ASN][1000 genomes]
rs6817032	0.89[EUR][1000 genomes]
rs6836252	0.87[ASN][1000 genomes]
rs6836483	0.91[ASN][1000 genomes]
rs6853523	0.91[ASN][1000 genomes]
rs6857872	0.91[ASN][1000 genomes]
rs6857937	0.91[ASN][1000 genomes]
rs6858838	0.91[ASN][1000 genomes]
rs72680008	0.81[ASN][1000 genomes]
rs72680022	0.91[ASN][1000 genomes]
rs744559	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7655646	0.94[ASN][1000 genomes]
rs7666038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7686939	0.90[EUR][1000 genomes]
rs7687004	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7687516	0.88[EUR][1000 genomes]
rs7694318	0.81[ASN][1000 genomes]
rs894532	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9284641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs960588	0.92[EUR][1000 genomes]
rs967532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967533	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs967534	0.95[EUR][1000 genomes]
rs998857	0.91[ASN][1000 genomes]
rs998858	0.91[ASN][1000 genomes]
rs999285	0.91[ASN][1000 genomes]
rs9997843	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9998370	0.90[EUR][1000 genomes]
rs9999648	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128151600-128160400	Weak transcription	Fetal Stomach	stomach
2	chr4:128157600-128162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:128157800-128160400	Enhancers	Fetal Lung	lung
4	chr4:128158800-128160400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:128159200-128160200	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:128159200-128161400	Weak transcription	NHDF-Ad	bronchial

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