Variant report

Variant	rs7687004
Chromosome Location	chr4:128168295-128168296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1000707	0.82[ASN][1000 genomes]
rs10012435	0.82[ASN][1000 genomes]
rs10020400	0.85[EUR][1000 genomes]
rs10518518	0.82[ASN][1000 genomes]
rs11098914	0.82[ASN][1000 genomes]
rs11098915	0.82[ASN][1000 genomes]
rs11098917	0.82[ASN][1000 genomes]
rs11722995	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11731344	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12647820	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12647867	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13116918	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13122922	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13124828	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1348358	0.81[EUR][1000 genomes]
rs1443061	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1443062	0.90[EUR][1000 genomes]
rs1443064	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1443065	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1443066	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1550626	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1584019	0.86[ASN][1000 genomes]
rs17228715	0.82[ASN][1000 genomes]
rs17228756	0.82[ASN][1000 genomes]
rs17228875	0.82[ASN][1000 genomes]
rs17229246	0.82[ASN][1000 genomes]
rs17229576	0.84[ASN][1000 genomes]
rs17294432	0.82[ASN][1000 genomes]
rs17294586	0.82[ASN][1000 genomes]
rs17294663	0.82[ASN][1000 genomes]
rs17295431	0.84[ASN][1000 genomes]
rs1838032	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1899547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1899548	0.93[EUR][1000 genomes]
rs1992516	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2120088	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28524825	0.82[ASN][1000 genomes]
rs35327125	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4240281	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4306972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4435756	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4550943	0.82[ASN][1000 genomes]
rs4574426	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4574428	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4833373	0.82[EUR][1000 genomes]
rs4834186	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4997057	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55773382	0.82[ASN][1000 genomes]
rs56216620	0.82[ASN][1000 genomes]
rs56387802	0.82[ASN][1000 genomes]
rs62333900	0.82[ASN][1000 genomes]
rs62333901	0.82[ASN][1000 genomes]
rs62333902	0.82[ASN][1000 genomes]
rs62333903	0.82[ASN][1000 genomes]
rs62333904	0.82[ASN][1000 genomes]
rs62333905	0.82[ASN][1000 genomes]
rs62333906	0.82[ASN][1000 genomes]
rs62333907	0.82[ASN][1000 genomes]
rs62333908	0.82[ASN][1000 genomes]
rs62335164	0.84[ASN][1000 genomes]
rs6810678	0.82[ASN][1000 genomes]
rs6817032	0.90[EUR][1000 genomes]
rs6836483	0.82[ASN][1000 genomes]
rs6853523	0.82[ASN][1000 genomes]
rs6857872	0.82[ASN][1000 genomes]
rs6857937	0.82[ASN][1000 genomes]
rs6858838	0.82[ASN][1000 genomes]
rs72680022	0.82[ASN][1000 genomes]
rs744559	0.82[ASN][1000 genomes]
rs7655646	0.85[ASN][1000 genomes]
rs7666038	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7686939	0.94[EUR][1000 genomes]
rs7687516	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs894532	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9284641	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs960588	0.95[EUR][1000 genomes]
rs967532	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs967533	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs967534	0.93[EUR][1000 genomes]
rs998857	0.82[ASN][1000 genomes]
rs998858	0.82[ASN][1000 genomes]
rs999285	0.82[ASN][1000 genomes]
rs9997843	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9998370	0.91[EUR][1000 genomes]
rs9999648	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128162600-128170000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128168200-128168800	Enhancers	K562	blood

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