Variant report

Variant	rs62333904
Chromosome Location	chr4:128133589-128133590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1000707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012435	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10518518	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098914	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11098917	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722995	0.92[ASN][1000 genomes]
rs11731344	0.92[ASN][1000 genomes]
rs12647820	0.94[ASN][1000 genomes]
rs12647867	0.92[ASN][1000 genomes]
rs13116918	0.92[ASN][1000 genomes]
rs13124828	0.92[ASN][1000 genomes]
rs1351425	0.87[EUR][1000 genomes]
rs1351426	0.88[EUR][1000 genomes]
rs1383520	0.85[EUR][1000 genomes]
rs1443064	0.85[ASN][1000 genomes]
rs1443065	0.91[ASN][1000 genomes]
rs1443066	0.91[ASN][1000 genomes]
rs1480897	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1480909	0.86[EUR][1000 genomes]
rs1480910	0.85[EUR][1000 genomes]
rs1550626	0.91[ASN][1000 genomes]
rs17228715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229246	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229576	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17293310	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17293345	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17293359	0.90[EUR][1000 genomes]
rs17294432	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294586	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17295431	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1992516	0.91[ASN][1000 genomes]
rs28524825	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240281	0.91[ASN][1000 genomes]
rs4550943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4550946	0.88[EUR][1000 genomes]
rs4574426	0.96[ASN][1000 genomes]
rs4834186	0.91[ASN][1000 genomes]
rs4997057	0.91[ASN][1000 genomes]
rs55773382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55824976	0.86[EUR][1000 genomes]
rs56216620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56387802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333871	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62333879	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62333900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333901	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333902	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333906	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62333908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62335164	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62335523	0.86[EUR][1000 genomes]
rs62335528	0.88[EUR][1000 genomes]
rs6810678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836252	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6836483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72680008	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72680022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744559	0.93[ASN][1000 genomes]
rs7655646	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666038	0.92[ASN][1000 genomes]
rs7687004	0.82[ASN][1000 genomes]
rs7694318	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9284641	0.92[ASN][1000 genomes]
rs967532	0.91[ASN][1000 genomes]
rs967533	0.91[ASN][1000 genomes]
rs976814	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs998857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9997843	0.96[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128131200-128134000	Enhancers	Ovary	ovary
2	chr4:128131400-128135600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:128131600-128134000	Enhancers	Fetal Kidney	kidney
4	chr4:128131600-128136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:128131800-128134000	Enhancers	Adipose Nuclei	Adipose
6	chr4:128132000-128134000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:128132000-128134200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:128132200-128134200	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:128132200-128135200	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:128132200-128135200	Weak transcription	Fetal Stomach	stomach
11	chr4:128132200-128135200	Weak transcription	Right Atrium	heart
12	chr4:128132400-128135400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:128132800-128134000	Enhancers	Colon Smooth Muscle	Colon
14	chr4:128133000-128134000	Enhancers	NHDF-Ad	bronchial
15	chr4:128133000-128134200	Enhancers	NH-A	brain
16	chr4:128133000-128134200	Enhancers	Osteobl	bone
17	chr4:128133200-128133600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:128133200-128134000	Enhancers	Aorta	Aorta
19	chr4:128133200-128135000	Weak transcription	Fetal Lung	lung
20	chr4:128133200-128138000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:128133400-128133600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:128133400-128133800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:128133400-128133800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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