Variant report

Variant	rs12498324
Chromosome Location	chr4:128132034-128132035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:128131027..128132632-chr4:128136404..128139237,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10019793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10020400	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722995	0.88[EUR][1000 genomes]
rs11731344	0.88[EUR][1000 genomes]
rs11934978	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501512	0.88[ASN][1000 genomes]
rs12507297	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647820	0.90[EUR][1000 genomes]
rs12647867	0.89[EUR][1000 genomes]
rs13116918	0.96[EUR][1000 genomes]
rs13124828	0.87[EUR][1000 genomes]
rs13145752	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443061	0.83[EUR][1000 genomes]
rs1596282	0.85[EUR][1000 genomes]
rs1899548	0.87[ASN][1000 genomes]
rs1992516	0.87[EUR][1000 genomes]
rs2218321	0.84[EUR][1000 genomes]
rs4574426	0.96[EUR][1000 genomes]
rs4574427	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4833373	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4834186	0.88[EUR][1000 genomes]
rs4997057	0.86[EUR][1000 genomes]
rs6820610	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs744559	0.93[EUR][1000 genomes]
rs7666038	0.89[EUR][1000 genomes]
rs7666301	0.85[EUR][1000 genomes]
rs7686939	0.88[ASN][1000 genomes]
rs9284641	0.88[EUR][1000 genomes]
rs960588	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs967534	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997843	0.96[EUR][1000 genomes]
rs9998370	0.86[ASN][1000 genomes]
rs9999648	0.92[CEU][hapmap];0.81[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128126000-128133400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:128130600-128132400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:128131200-128134000	Enhancers	Ovary	ovary
4	chr4:128131400-128132400	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr4:128131400-128135600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:128131600-128132200	Enhancers	Fetal Stomach	stomach
7	chr4:128131600-128132200	Enhancers	Left Ventricle	heart
8	chr4:128131600-128132200	Enhancers	Psoas Muscle	Psoas
9	chr4:128131600-128132200	Enhancers	Right Atrium	heart
10	chr4:128131600-128133000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:128131600-128134000	Enhancers	Fetal Kidney	kidney
12	chr4:128131600-128136200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:128131800-128132800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:128131800-128132800	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:128131800-128134000	Enhancers	Adipose Nuclei	Adipose
16	chr4:128132000-128132200	Enhancers	Fetal Muscle Leg	muscle
17	chr4:128132000-128132200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr4:128132000-128132400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:128132000-128132400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:128132000-128132400	Enhancers	Fetal Intestine Small	intestine
21	chr4:128132000-128132400	Enhancers	Stomach Smooth Muscle	stomach
22	chr4:128132000-128134000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr4:128132000-128134200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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