Variant report

Variant	rs17278402
Chromosome Location	chr4:127991638-127991639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13116630	0.94[ASN][1000 genomes]
rs1351425	0.82[ASN][1000 genomes]
rs1351426	0.82[ASN][1000 genomes]
rs1383520	0.94[ASN][1000 genomes]
rs1480909	0.90[ASN][1000 genomes]
rs1480910	0.90[ASN][1000 genomes]
rs17213081	0.94[ASN][1000 genomes]
rs17291337	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[ASN][1000 genomes]
rs34120215	0.94[ASN][1000 genomes]
rs4550946	0.86[ASN][1000 genomes]
rs4834165	0.81[CHB][hapmap]
rs55824976	0.90[ASN][1000 genomes]
rs62335485	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62335489	0.94[ASN][1000 genomes]
rs62335523	0.88[ASN][1000 genomes]
rs62335528	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127990600-127993400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:127991000-127991800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:127991000-127991800	Enhancers	Aorta	Aorta
4	chr4:127991600-127991800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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