Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10002741	0.83[AMR][1000 genomes]
rs1510666	0.80[AMR][1000 genomes]
rs1510671	0.82[ASN][1000 genomes]
rs1510677	0.80[ASN][1000 genomes]
rs1510678	0.82[ASN][1000 genomes]
rs1510694	0.83[AMR][1000 genomes]
rs17209401	0.85[AMR][1000 genomes]
rs17209459	0.85[AMR][1000 genomes]
rs17272221	0.91[EUR][1000 genomes]
rs17273728	0.91[AMR][1000 genomes]
rs17274168	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17274880	0.85[AMR][1000 genomes]
rs1848932	0.82[ASN][1000 genomes]
rs1877070	0.82[ASN][1000 genomes]
rs1960849	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2048378	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2391124	0.84[AMR][1000 genomes]
rs4631063	0.91[EUR][1000 genomes]
rs4833363	0.84[AMR][1000 genomes]
rs4834145	0.91[EUR][1000 genomes]
rs5011815	0.87[AMR][1000 genomes]
rs56305646	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57018884	0.87[AMR][1000 genomes]
rs59656578	0.91[EUR][1000 genomes]
rs60444403	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60662195	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323481	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62323516	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6534591	0.82[ASN][1000 genomes]
rs7689620	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834093	chr2:56538097-56708677	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004449	chr2:56538460-56715861	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv874171	chr2:56545845-56727178	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527600-56561000	Weak transcription	HSMM	muscle
2	chr2:56546200-56552800	Weak transcription	Left Ventricle	heart

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