Variant report
| Variant | rs59656578 |
|---|---|
| Chromosome Location | chr4:127778847-127778848 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127771990..127773680-chr4:127776900..127779323,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10446736 | 0.82[ASN][1000 genomes] |
| rs1472702 | 0.81[ASN][1000 genomes] |
| rs1503632 | 0.82[ASN][1000 genomes] |
| rs1503634 | 0.81[ASN][1000 genomes] |
| rs16997944 | 0.82[ASN][1000 genomes] |
| rs17272221 | 0.85[EUR][1000 genomes] |
| rs2134642 | 0.81[ASN][1000 genomes] |
| rs4631063 | 0.85[EUR][1000 genomes] |
| rs4834145 | 0.85[EUR][1000 genomes] |
| rs60662195 | 0.91[EUR][1000 genomes] |
| rs62323476 | 0.91[EUR][1000 genomes] |
| rs62323479 | 0.91[EUR][1000 genomes] |
| rs62323481 | 0.91[EUR][1000 genomes] |
| rs62323483 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879909 | chr4:127646765-127792639 | Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv879910 | chr4:127646765-127805466 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv879911 | chr4:127646765-127835677 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv428773 | chr4:127760014-127913973 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127772800-127792000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
