Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002741	0.92[EUR][1000 genomes]
rs12503377	0.81[ASN][1000 genomes]
rs12504419	0.80[CHB][hapmap]
rs13110529	0.83[ASN][1000 genomes]
rs13115066	0.85[ASN][1000 genomes]
rs13142376	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes]
rs1510668	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1510675	0.94[ASN][1000 genomes]
rs17273728	0.90[EUR][1000 genomes]
rs1960849	0.82[EUR][1000 genomes]
rs1995903	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2391117	0.82[AMR][1000 genomes]
rs2893204	0.83[AMR][1000 genomes]
rs4345195	0.82[AMR][1000 genomes]
rs4391044	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4554089	0.83[ASN][1000 genomes]
rs4834152	0.81[ASN][1000 genomes]
rs6534591	0.93[AFR][1000 genomes]
rs6816030	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6822430	0.81[ASN][1000 genomes]
rs6824020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832255	0.80[ASN][1000 genomes]
rs7654524	0.80[CEU][hapmap]
rs7662706	0.82[YRI][hapmap]
rs7677910	0.83[ASN][1000 genomes]
rs7695040	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127794000-127812200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:127803200-127815600	Weak transcription	K562	blood
3	chr4:127808600-127812000	Weak transcription	NHLF	lung
4	chr4:127809400-127810000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:127809400-127810800	Enhancers	NHEK	skin
6	chr4:127809400-127811000	Enhancers	NHDF-Ad	bronchial

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