Variant report

Variant	rs56024875
Chromosome Location	chr6:12547784-12547785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55859859	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722801	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73722802	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73726305	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726309	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7748722	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7756840	1.00[EUR][1000 genomes]
rs7767501	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9688787	1.00[EUR][1000 genomes]
rs9689070	1.00[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12544600-12549400	Enhancers	HSMMtube	muscle
2	chr6:12546800-12548800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:12547000-12548600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:12547000-12555600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:12547200-12548600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:12547200-12548600	Weak transcription	Osteobl	bone
7	chr6:12547200-12548800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:12547200-12555600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:12547400-12547800	Weak transcription	HSMM	muscle
10	chr6:12547400-12548600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:12547400-12548600	Weak transcription	Aorta	Aorta
12	chr6:12547400-12548600	Weak transcription	NH-A	brain
13	chr6:12547600-12547800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:12547600-12549200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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