Variant report

Variant	rs73726309
Chromosome Location	chr6:12579826-12579827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55859859	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024875	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73722801	1.00[EUR][1000 genomes]
rs73722802	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73726305	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756840	1.00[EUR][1000 genomes]
rs7767501	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9688787	1.00[EUR][1000 genomes]
rs9689070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12573800-12586000	Weak transcription	Pancreas	Pancrea
2	chr6:12574000-12594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:12575600-12581200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:12576000-12580200	Enhancers	HMEC	breast
5	chr6:12576800-12580000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:12577000-12580200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:12578000-12580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:12578000-12580800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:12578200-12580200	Enhancers	NHEK	skin
10	chr6:12578200-12585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:12578200-12585400	Weak transcription	Placenta	Placenta
12	chr6:12578400-12585400	Weak transcription	Lung	lung
13	chr6:12578800-12582200	Weak transcription	HUVEC	blood vessel
14	chr6:12579000-12582600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:12579000-12585000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:12579200-12585000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:12579400-12588200	Weak transcription	A549	lung
18	chr6:12579600-12582600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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