Variant report

Variant	rs7748722
Chromosome Location	chr6:12574782-12574783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12541568..12543424-chr6:12573453..12575885,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55859859	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56024875	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73722801	1.00[EUR][1000 genomes]
rs73722802	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73726305	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73726309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756840	1.00[EUR][1000 genomes]
rs7767501	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9688787	1.00[EUR][1000 genomes]
rs9689070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470801	chr6:12559239-12666093	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv462638	chr6:12569231-12651249	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv600991	chr6:12569231-12651249	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12569800-12577400	Weak transcription	Esophagus	oesophagus
2	chr6:12571000-12575600	Weak transcription	Fetal Brain Male	brain
3	chr6:12571600-12577200	Weak transcription	Fetal Kidney	kidney
4	chr6:12572600-12575200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:12573000-12575000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:12573200-12575200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:12573200-12579200	Enhancers	NHDF-Ad	bronchial
8	chr6:12573400-12577200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:12573800-12576800	Enhancers	NHEK	skin
10	chr6:12573800-12577600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:12573800-12578800	Enhancers	HUVEC	blood vessel
12	chr6:12573800-12579400	Enhancers	HSMM	muscle
13	chr6:12573800-12586000	Weak transcription	Pancreas	Pancrea
14	chr6:12574000-12575600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:12574000-12575800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:12574000-12576000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:12574000-12576200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:12574000-12576800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:12574000-12576800	Weak transcription	Osteobl	bone
20	chr6:12574000-12577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:12574000-12577400	Weak transcription	Placenta	Placenta
22	chr6:12574000-12577800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:12574000-12578000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:12574000-12578200	Enhancers	HSMMtube	muscle
25	chr6:12574000-12579400	Enhancers	A549	lung
26	chr6:12574000-12594600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:12574200-12576400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:12574200-12576600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:12574200-12576800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:12574200-12576800	Weak transcription	NH-A	brain
31	chr6:12574400-12576200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:12574600-12576000	Weak transcription	HMEC	breast
33	chr6:12574600-12577000	Weak transcription	NHLF	lung

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