Variant report

Variant	rs56031317
Chromosome Location	chr15:59137930-59137931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58210669	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58734999	1.00[AMR][1000 genomes]
rs59631822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017335	1.00[AMR][1000 genomes]
rs74021008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59064600-59145600	Weak transcription	Gastric	stomach
2	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
3	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
4	chr15:59075000-59139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:59077800-59153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
7	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr15:59100400-59139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:59103600-59148800	Weak transcription	A549	lung
10	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
11	chr15:59104000-59139800	Weak transcription	Fetal Lung	lung
12	chr15:59104000-59146600	Weak transcription	NH-A	brain
13	chr15:59104000-59148400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:59104000-59157000	Weak transcription	Esophagus	oesophagus
15	chr15:59104000-59157200	Weak transcription	NHLF	lung
16	chr15:59105000-59139800	Weak transcription	HMEC	breast
17	chr15:59106000-59139200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:59106000-59139600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr15:59106000-59156800	Weak transcription	Lung	lung
20	chr15:59106200-59156800	Weak transcription	Ovary	ovary
21	chr15:59106200-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:59106400-59139400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:59106600-59146400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:59106600-59157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:59106800-59139400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:59106800-59144600	Weak transcription	HSMMtube	muscle
27	chr15:59106800-59156400	Weak transcription	Fetal Kidney	kidney
28	chr15:59107200-59142000	Weak transcription	Brain Germinal Matrix	brain
29	chr15:59107200-59147600	Weak transcription	Osteobl	bone
30	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:59112000-59139800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr15:59112000-59147800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:59115000-59146800	Weak transcription	HepG2	liver
34	chr15:59119400-59144000	Weak transcription	Fetal Brain Female	brain
35	chr15:59119600-59138800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr15:59119600-59149600	Weak transcription	Dnd41	blood
37	chr15:59119800-59139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:59122000-59156400	Weak transcription	Fetal Heart	heart
40	chr15:59122200-59141600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr15:59123000-59139800	Weak transcription	HSMM	muscle
42	chr15:59123200-59139800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:59125800-59139200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:59126000-59139600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:59126000-59156600	Weak transcription	Right Ventricle	heart
46	chr15:59126200-59141800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:59126200-59157000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:59126600-59139400	Weak transcription	Primary B cells from cord blood	blood
49	chr15:59126800-59139400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:59126800-59139600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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