Variant report

Variant	rs74017335
Chromosome Location	chr15:59281376-59281377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59278921..59283219-chr15:59397062..59399778,7	K562	blood:
2	chr15:59225566..59227578-chr15:59280819..59282364,2	K562	blood:
3	chr15:59223432..59227578-chr15:59278800..59283796,7	K562	blood:
4	chr15:59277958..59282108-chr15:59396207..59399778,7	K562	blood:

Variant related genes	Relation type
ENSG00000157456	Chromatin interaction
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56031317	1.00[AMR][1000 genomes]
rs58210669	1.00[AMR][1000 genomes]
rs58734999	1.00[AMR][1000 genomes]
rs59631822	1.00[AMR][1000 genomes]
rs74017306	1.00[AMR][1000 genomes]
rs74017309	1.00[AMR][1000 genomes]
rs74017312	1.00[AMR][1000 genomes]
rs74021008	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59278800-59281400	Active TSS	Psoas Muscle	Psoas
2	chr15:59279000-59281400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr15:59279000-59281400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr15:59279000-59281400	Active TSS	Stomach Smooth Muscle	stomach
5	chr15:59279000-59281800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:59279000-59281800	Active TSS	K562	blood
7	chr15:59279200-59281400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:59279200-59281400	Active TSS	Brain Substantia Nigra	brain
9	chr15:59279200-59281400	Active TSS	Ovary	ovary
10	chr15:59279200-59281400	Active TSS	Right Ventricle	heart
11	chr15:59279200-59281400	Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr15:59279200-59281600	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr15:59279200-59281600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr15:59279200-59281600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:59279200-59281600	Active TSS	NHDF-Ad	bronchial
16	chr15:59279200-59281800	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr15:59279200-59281800	Active TSS	H1 Cell Line	embryonic stem cell
18	chr15:59279200-59281800	Active TSS	Muscle Satellite Cultured Cells	--
19	chr15:59279200-59281800	Active TSS	Aorta	Aorta
20	chr15:59279200-59281800	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr15:59279200-59281800	Active TSS	Fetal Stomach	stomach
22	chr15:59279200-59282000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:59279200-59282000	Active TSS	Fetal Intestine Large	intestine
24	chr15:59279200-59282000	Active TSS	Fetal Kidney	kidney
25	chr15:59279200-59282000	Active TSS	Right Atrium	heart
26	chr15:59279200-59282400	Active TSS	NHLF	lung
27	chr15:59279200-59282600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:59279400-59281400	Active TSS	Fetal Muscle Leg	muscle
29	chr15:59279400-59281400	Active TSS	Placenta	Placenta
30	chr15:59279400-59281400	Active TSS	Stomach Mucosa	stomach
31	chr15:59279400-59281400	Active TSS	A549	lung
32	chr15:59279400-59281600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:59279400-59281800	Active TSS	HSMMtube	muscle
34	chr15:59279400-59282000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:59279400-59282000	Active TSS	GM12878-XiMat	blood
36	chr15:59279600-59281400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:59279600-59281400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr15:59279600-59281400	Active TSS	Thymus	Thymus
39	chr15:59279600-59281400	Active TSS	NHEK	skin
40	chr15:59279600-59281600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:59279600-59281600	Active TSS	Primary monocytes fromperipheralblood	blood
42	chr15:59279600-59281600	Active TSS	HSMM	muscle
43	chr15:59279600-59281800	Active TSS	Fetal Brain Female	brain
44	chr15:59279600-59281800	Active TSS	NH-A	brain
45	chr15:59279600-59282000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:59279600-59282400	Active TSS	HMEC	breast
47	chr15:59279600-59282800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:59280400-59282000	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr15:59280600-59281400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:59280600-59281400	Active TSS	Colonic Mucosa	Colon

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