Variant report

Variant	rs58210669
Chromosome Location	chr15:59108001-59108002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56031317	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56365631	1.00[AMR][1000 genomes]
rs58734999	1.00[AMR][1000 genomes]
rs59631822	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017306	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017309	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017312	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74017335	1.00[AMR][1000 genomes]
rs74021008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv428638	chr15:59032300-59126567	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
7	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59064600-59145600	Weak transcription	Gastric	stomach
2	chr15:59065200-59117800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:59065800-59142800	Weak transcription	Aorta	Aorta
4	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
5	chr15:59067400-59111400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:59069600-59119000	Weak transcription	Fetal Brain Male	brain
7	chr15:59069800-59121400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:59075000-59139800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:59077800-59122000	Weak transcription	Brain Substantia Nigra	brain
10	chr15:59077800-59153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr15:59086200-59125800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:59086400-59125800	Weak transcription	Right Ventricle	heart
13	chr15:59088400-59119200	Weak transcription	Colonic Mucosa	Colon
14	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
15	chr15:59090400-59121600	Weak transcription	Fetal Heart	heart
16	chr15:59094200-59122800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr15:59097000-59110400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:59100400-59122200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:59100400-59139800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:59101800-59112400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr15:59102000-59108200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:59102000-59109200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:59102000-59126400	Weak transcription	Stomach Mucosa	stomach
25	chr15:59102600-59109200	Strong transcription	Fetal Muscle Leg	muscle
26	chr15:59102600-59111800	Strong transcription	Fetal Thymus	thymus
27	chr15:59102600-59112200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:59102800-59111800	Strong transcription	Thymus	Thymus
29	chr15:59103000-59109400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:59103000-59111800	Strong transcription	Fetal Stomach	stomach
31	chr15:59103200-59135200	Weak transcription	Pancreas	Pancrea
32	chr15:59103400-59119800	Weak transcription	HUVEC	blood vessel
33	chr15:59103400-59120200	Weak transcription	GM12878-XiMat	blood
34	chr15:59103600-59118000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:59103600-59148800	Weak transcription	A549	lung
36	chr15:59103800-59119000	Weak transcription	Dnd41	blood
37	chr15:59103800-59122000	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:59103800-59133000	Weak transcription	Spleen	Spleen
39	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
40	chr15:59104000-59108200	Weak transcription	K562	blood
41	chr15:59104000-59112600	Weak transcription	HepG2	liver
42	chr15:59104000-59117200	Weak transcription	NHDF-Ad	bronchial
43	chr15:59104000-59117600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr15:59104000-59118600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:59104000-59118600	Weak transcription	Fetal Brain Female	brain
46	chr15:59104000-59120000	Weak transcription	Primary B cells from peripheral blood	blood
47	chr15:59104000-59122200	Weak transcription	Brain Angular Gyrus	brain
48	chr15:59104000-59122400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:59104000-59122600	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:59104000-59125200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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