Variant report

Variant	rs56050409
Chromosome Location	chr6:151073464-151073465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6934294	1.00[AMR][1000 genomes]
rs6940412	1.00[AMR][1000 genomes]
rs7741487	1.00[AMR][1000 genomes]
rs7761188	1.00[AMR][1000 genomes]
rs7761378	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1019919	chr6:151028969-151161789	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv538474	chr6:151028969-151161789	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:151042400-151074800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:151042600-151085400	Weak transcription	Esophagus	oesophagus
3	chr6:151055600-151074800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:151055800-151074400	Weak transcription	Fetal Stomach	stomach
5	chr6:151055800-151074800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:151056000-151087200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:151058600-151075600	Weak transcription	Thymus	Thymus
8	chr6:151061600-151075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:151061600-151112200	Weak transcription	Right Atrium	heart
10	chr6:151062400-151074400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:151063000-151074600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:151067400-151074600	Weak transcription	Left Ventricle	heart
13	chr6:151067400-151074800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:151067400-151075000	Weak transcription	Lung	lung
15	chr6:151068600-151074400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:151068800-151074000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:151069000-151074400	Weak transcription	Fetal Lung	lung
18	chr6:151070200-151074600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:151070400-151073600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:151070600-151074400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:151070800-151073600	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:151070800-151074600	Weak transcription	Fetal Heart	heart
23	chr6:151071600-151074400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:151072000-151073600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:151072000-151074000	Enhancers	Osteobl	bone
26	chr6:151072000-151074200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:151072000-151074400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:151072000-151075400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:151072400-151073600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:151072400-151079400	Strong transcription	Primary B cells from cord blood	blood
31	chr6:151072600-151073600	Weak transcription	HMEC	breast
32	chr6:151072600-151073800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:151072600-151073800	Strong transcription	Fetal Thymus	thymus
34	chr6:151072800-151073800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:151072800-151073800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:151072800-151074600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:151072800-151075000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:151072800-151077200	Weak transcription	HUVEC	blood vessel
39	chr6:151072800-151085600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:151073000-151074400	Weak transcription	NH-A	brain
41	chr6:151073200-151074000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:151073200-151074000	Weak transcription	Brain Substantia Nigra	brain
43	chr6:151073200-151074600	Weak transcription	HSMMtube	muscle
44	chr6:151073200-151074800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:151073400-151074200	Enhancers	Fetal Kidney	kidney

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