Variant report
| Variant | rs56051740 |
|---|---|
| Chromosome Location | chr12:86354644-86354645 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NTS-1 | chr12:86354344-86354725 | ENSG00000258178 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs17855890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs55797108 | 0.84[AMR][1000 genomes] |
| rs55873664 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs55935463 | 0.84[AMR][1000 genomes] |
| rs55981206 | 0.84[AMR][1000 genomes] |
| rs56224424 | 0.83[AFR][1000 genomes] |
| rs56295858 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs56299996 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs61929366 | 0.83[AFR][1000 genomes] |
| rs61929388 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61929396 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61929398 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61929418 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61929423 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61930918 | 0.84[AMR][1000 genomes] |
| rs61930919 | 0.84[AMR][1000 genomes] |
| rs61930920 | 0.84[AMR][1000 genomes] |
| rs61930922 | 0.80[AMR][1000 genomes] |
| rs61930923 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs61930924 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs61930926 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs61931065 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs61931067 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs61931146 | 0.83[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049179 | chr12:86056376-86799188 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv1797806 | chr12:86198935-86425608 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv559667 | chr12:86318004-86416212 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
