Variant report

Variant	rs61930924
Chromosome Location	chr12:86293111-86293112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs17855890	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55773154	0.83[AFR][1000 genomes]
rs55797108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55873664	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55908819	0.83[AFR][1000 genomes]
rs55935463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55981206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56051740	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56224424	1.00[AFR][1000 genomes]
rs56295858	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56299996	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs61929366	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61929388	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61929396	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929398	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929418	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61929423	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61930918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930922	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61930923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61931065	0.84[AMR][1000 genomes]
rs61931067	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3497653	chr12:86292872-86294406	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	esv3497664	chr12:86292872-86294406	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86290600-86293200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:86292800-86294200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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