Variant report

Variant	rs56052517
Chromosome Location	chr3:94122232-94122233
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1601921	1.00[EUR][1000 genomes]
rs4444711	1.00[EUR][1000 genomes]
rs55819815	1.00[AMR][1000 genomes]
rs57180360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59957506	1.00[AMR][1000 genomes]
rs6441553	1.00[EUR][1000 genomes]
rs6769774	1.00[EUR][1000 genomes]
rs6778041	1.00[EUR][1000 genomes]
rs73846102	1.00[AMR][1000 genomes]
rs73846406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846407	1.00[AMR][1000 genomes]
rs73846408	1.00[EUR][1000 genomes]
rs73846409	1.00[EUR][1000 genomes]
rs73846410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848003	1.00[AMR][1000 genomes]
rs73848009	1.00[AMR][1000 genomes]
rs73848012	1.00[AMR][1000 genomes]
rs73848015	1.00[AMR][1000 genomes]
rs73848025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73848026	1.00[AMR][1000 genomes]
rs73848043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848066	1.00[EUR][1000 genomes]
rs73848067	1.00[EUR][1000 genomes]
rs73848068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9870987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1000265	chr3:94012384-94259057	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv536650	chr3:94012384-94259057	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv877164	chr3:94018657-94146460	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877165	chr3:94018657-94160736	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv997698	chr3:94030474-94212738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv536651	chr3:94030474-94212738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv877166	chr3:94091142-94146460	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
16	nsv834765	chr3:94116586-94321775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94112600-94132200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:94118600-94125000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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