Variant report

Variant	rs6778041
Chromosome Location	chr3:94289556-94289557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11705974	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11714095	1.00[EUR][1000 genomes]
rs12107188	1.00[EUR][1000 genomes]
rs1387105	0.87[AFR][1000 genomes]
rs1387106	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1387119	1.00[EUR][1000 genomes]
rs1488773	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1488787	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1586544	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1601921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844175	1.00[EUR][1000 genomes]
rs1948182	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2885052	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3919963	1.00[EUR][1000 genomes]
rs4263292	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4342106	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4444711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4478077	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4637293	0.94[AFR][1000 genomes]
rs4857455	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56052517	1.00[EUR][1000 genomes]
rs62269494	1.00[EUR][1000 genomes]
rs6441553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784110	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73846406	1.00[EUR][1000 genomes]
rs73846408	1.00[EUR][1000 genomes]
rs73846409	1.00[EUR][1000 genomes]
rs73846410	1.00[EUR][1000 genomes]
rs73846411	1.00[EUR][1000 genomes]
rs73846412	1.00[EUR][1000 genomes]
rs73846413	1.00[EUR][1000 genomes]
rs73846414	1.00[EUR][1000 genomes]
rs73848056	1.00[EUR][1000 genomes]
rs73848061	1.00[EUR][1000 genomes]
rs73848064	1.00[EUR][1000 genomes]
rs73848066	1.00[EUR][1000 genomes]
rs73848067	1.00[EUR][1000 genomes]
rs73848068	1.00[EUR][1000 genomes]
rs7431523	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7615787	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622574	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7624505	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7629777	1.00[EUR][1000 genomes]
rs7630056	1.00[EUR][1000 genomes]
rs7635351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7642364	1.00[ASN][1000 genomes]
rs7645610	1.00[EUR][1000 genomes]
rs7652810	1.00[EUR][1000 genomes]
rs9814389	1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9834038	1.00[EUR][1000 genomes]
rs9848985	1.00[EUR][1000 genomes]
rs9849005	1.00[EUR][1000 genomes]
rs9856114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857391	1.00[EUR][1000 genomes]
rs9862277	1.00[EUR][1000 genomes]
rs9870987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv834765	chr3:94116586-94321775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv834766	chr3:94232527-94365784	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv967258	chr3:94286134-94300566	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94287600-94292000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links