Variant report

Variant	rs73846414
Chromosome Location	chr3:94243329-94243330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11705974	1.00[EUR][1000 genomes]
rs11714095	1.00[EUR][1000 genomes]
rs12107188	1.00[EUR][1000 genomes]
rs1387119	1.00[EUR][1000 genomes]
rs1601921	1.00[EUR][1000 genomes]
rs1844175	1.00[EUR][1000 genomes]
rs3919963	1.00[EUR][1000 genomes]
rs4444711	1.00[EUR][1000 genomes]
rs56052517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57180360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62269494	1.00[EUR][1000 genomes]
rs6441553	1.00[EUR][1000 genomes]
rs6769774	1.00[EUR][1000 genomes]
rs6778041	1.00[EUR][1000 genomes]
rs73846406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846407	1.00[AMR][1000 genomes]
rs73846408	1.00[EUR][1000 genomes]
rs73846409	1.00[EUR][1000 genomes]
rs73846410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848066	1.00[EUR][1000 genomes]
rs73848067	1.00[EUR][1000 genomes]
rs73848068	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7615787	1.00[EUR][1000 genomes]
rs7629777	1.00[EUR][1000 genomes]
rs7630056	1.00[EUR][1000 genomes]
rs7635351	1.00[EUR][1000 genomes]
rs7645610	1.00[EUR][1000 genomes]
rs7652810	1.00[EUR][1000 genomes]
rs9834038	1.00[EUR][1000 genomes]
rs9848985	1.00[EUR][1000 genomes]
rs9849005	1.00[EUR][1000 genomes]
rs9856114	1.00[EUR][1000 genomes]
rs9857391	1.00[EUR][1000 genomes]
rs9862277	1.00[EUR][1000 genomes]
rs9870987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869241	chr3:93527675-94504491	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv998173	chr3:93575084-94427403	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv536644	chr3:93575084-94427403	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1008711	chr3:93575284-94427264	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv536646	chr3:93575284-94427264	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv491829	chr3:93575285-94427263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1004176	chr3:93654100-94502551	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv877162	chr3:93779664-94278078	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1000265	chr3:94012384-94259057	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv536650	chr3:94012384-94259057	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv834765	chr3:94116586-94321775	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv834766	chr3:94232527-94365784	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:94240200-94244000	Weak transcription	Fetal Brain Female	brain
2	chr3:94242200-94243800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:94242400-94244600	Enhancers	Fetal Lung	lung
4	chr3:94242600-94243800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:94242600-94244000	Enhancers	Fetal Intestine Small	intestine
6	chr3:94242600-94244000	Enhancers	Fetal Stomach	stomach
7	chr3:94242600-94244200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:94242600-94244800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:94242800-94243400	Enhancers	Brain Hippocampus Middle	brain
10	chr3:94242800-94244400	Flanking Active TSS	Liver	Liver
11	chr3:94242800-94244600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:94242800-94244600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr3:94242800-94244600	Enhancers	Fetal Heart	heart
14	chr3:94242800-94245000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:94242800-94245000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:94243000-94243400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:94243000-94243400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:94243000-94243400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr3:94243000-94243800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr3:94243000-94244200	Enhancers	Stomach Mucosa	stomach
21	chr3:94243000-94244200	Enhancers	Stomach Smooth Muscle	stomach
22	chr3:94243000-94244400	Enhancers	Fetal Intestine Large	intestine
23	chr3:94243000-94245400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:94243200-94243600	Enhancers	A549	lung
25	chr3:94243200-94243600	Enhancers	HepG2	liver
26	chr3:94243200-94244000	Weak transcription	Ovary	ovary

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