The 2.0 version of rSNPBase

Variant report

Variant rs56054021
Chromosome Location chr1:61692009-61692010
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
2 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr1:61677600-61692400 Weak transcription Esophagus oesophagus
4 chr1:61679200-61692200 Weak transcription NHEK skin
5 chr1:61680000-61720200 Weak transcription Fetal Muscle Trunk muscle
6 chr1:61682000-61692400 Weak transcription Left Ventricle heart
7 chr1:61682000-61706800 Weak transcription Gastric stomach
8 chr1:61683800-61692400 Weak transcription Skeletal Muscle Male skeletal muscle
9 chr1:61684400-61692400 Weak transcription K562 blood
10 chr1:61686800-61693600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr1:61687600-61692400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:61690000-61692400 Enhancers Liver Liver
13 chr1:61690000-61692600 Enhancers Colon Smooth Muscle Colon
14 chr1:61690400-61692200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:61690400-61692400 Weak transcription Pancreas Pancrea
16 chr1:61690400-61693000 Enhancers Fetal Heart heart
17 chr1:61690400-61696400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr1:61690600-61692200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:61690600-61692400 Weak transcription Fetal Lung lung
20 chr1:61690600-61692400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:61690600-61692400 Weak transcription Right Atrium heart
22 chr1:61690600-61692600 Weak transcription HepG2 liver
23 chr1:61690600-61696400 Weak transcription Duodenum Mucosa Duodenum
24 chr1:61690600-61699000 Weak transcription Ovary ovary
25 chr1:61690800-61692200 Weak transcription Fetal Stomach stomach
26 chr1:61690800-61693600 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:61690800-61693600 Weak transcription Rectal Smooth Muscle rectum
28 chr1:61691200-61694200 Enhancers Brain Substantia Nigra brain
29 chr1:61691800-61692400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:61691800-61692400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr1:61691800-61692400 Enhancers Adipose Nuclei Adipose
32 chr1:61691800-61692400 Enhancers Aorta Aorta
33 chr1:61691800-61692400 Enhancers Brain Anterior Caudate brain
34 chr1:61691800-61692400 Enhancers Small Intestine intestine
35 chr1:61691800-61692600 Enhancers Brain Cingulate Gyrus brain
36 chr1:61691800-61692600 Enhancers Stomach Smooth Muscle stomach
37 chr1:61691800-61692600 Enhancers A549 lung
38 chr1:61691800-61693000 Enhancers Brain Angular Gyrus brain
39 chr1:61691800-61694200 Enhancers Cortex derived primary cultured neurospheres brain
40 chr1:61691800-61694200 Enhancers Brain Hippocampus Middle brain
41 chr1:61691800-61694200 Enhancers Fetal Brain Male brain
42 chr1:61691800-61694200 Enhancers Fetal Brain Female brain
43 chr1:61692000-61692200 Enhancers Duodenum Smooth Muscle Duodenum
44 chr1:61692000-61692400 Enhancers Brain Germinal Matrix brain
45 chr1:61692000-61692400 Enhancers Psoas Muscle Psoas
46 chr1:61692000-61692600 Enhancers Skeletal Muscle Female skeletal muscle
47 chr1:61692000-61692800 Enhancers Sigmoid Colon Sigmoid Colon
48 chr1:61692000-61692800 Enhancers Stomach Mucosa stomach
49 chr1:61692000-61693000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
50 chr1:61692000-61694200 Enhancers Brain Inferior Temporal Lobe brain

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Last update: Aug 31, 2015