The 2.0 version of rSNPBase

Variant report

Variant rs74090328
Chromosome Location chr1:61689296-61689297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:61669200-61692400 Weak transcription Fetal Muscle Leg muscle
2 chr1:61669400-61691800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:61669600-61692400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr1:61676600-61690000 Weak transcription Duodenum Smooth Muscle Duodenum
5 chr1:61677600-61692400 Weak transcription Esophagus oesophagus
6 chr1:61679200-61692200 Weak transcription NHEK skin
7 chr1:61680000-61720200 Weak transcription Fetal Muscle Trunk muscle
8 chr1:61682000-61690200 Weak transcription Ovary ovary
9 chr1:61682000-61692400 Weak transcription Left Ventricle heart
10 chr1:61682000-61706800 Weak transcription Gastric stomach
11 chr1:61682200-61691800 Weak transcription Stomach Smooth Muscle stomach
12 chr1:61683800-61692400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr1:61684000-61690000 Weak transcription Adipose Nuclei Adipose
14 chr1:61684200-61690200 Weak transcription Psoas Muscle Psoas
15 chr1:61684400-61692400 Weak transcription K562 blood
16 chr1:61686000-61690600 Enhancers HepG2 liver
17 chr1:61686000-61690800 Enhancers Brain Substantia Nigra brain
18 chr1:61686600-61690000 Weak transcription Colon Smooth Muscle Colon
19 chr1:61686600-61690200 Weak transcription Rectal Smooth Muscle rectum
20 chr1:61686600-61691800 Weak transcription Fetal Brain Female brain
21 chr1:61686800-61690200 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr1:61686800-61693600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:61687600-61690200 Weak transcription Aorta Aorta
24 chr1:61687600-61690200 Weak transcription Small Intestine intestine
25 chr1:61687600-61690600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr1:61687600-61691800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr1:61687600-61692000 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:61687600-61692400 Weak transcription Pancreatic Islets Pancreatic Islet
29 chr1:61687800-61690200 Weak transcription Fetal Lung lung
30 chr1:61688200-61690000 Weak transcription Liver Liver
31 chr1:61688200-61690000 Weak transcription Fetal Stomach stomach
32 chr1:61688200-61690400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:61688200-61691800 Weak transcription Fetal Brain Male brain
34 chr1:61688200-61692000 Weak transcription Brain Inferior Temporal Lobe brain
35 chr1:61688400-61691800 Weak transcription Brain Angular Gyrus brain
36 chr1:61688400-61692000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:61688600-61689600 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr1:61688600-61692000 Weak transcription Brain Germinal Matrix brain
39 chr1:61688800-61690200 Weak transcription Brain Cingulate Gyrus brain
40 chr1:61689000-61690000 Weak transcription Brain Hippocampus Middle brain
41 chr1:61689000-61690200 Weak transcription Right Atrium heart
42 chr1:61689000-61691800 Weak transcription A549 lung
43 chr1:61689200-61691800 Weak transcription Brain Anterior Caudate brain

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Last update: Aug 31, 2015