Variant report

Variant	rs56055084
Chromosome Location	chr6:11492145-11492146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs2140110	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4713579	0.87[ASN][1000 genomes]
rs471560	0.82[ASN][1000 genomes]
rs471752	0.83[ASN][1000 genomes]
rs483637	0.95[ASN][1000 genomes]
rs519140	0.86[ASN][1000 genomes]
rs524159	0.82[ASN][1000 genomes]
rs534042	0.81[EUR][1000 genomes]
rs538808	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs539160	0.86[ASN][1000 genomes]
rs552681	0.82[ASN][1000 genomes]
rs554671	0.83[ASN][1000 genomes]
rs555034	0.86[ASN][1000 genomes]
rs566237	0.83[ASN][1000 genomes]
rs571683	0.85[ASN][1000 genomes]
rs574254	0.86[ASN][1000 genomes]
rs581285	0.85[ASN][1000 genomes]
rs628980	0.86[ASN][1000 genomes]
rs645198	0.92[EUR][1000 genomes]
rs661055	0.84[ASN][1000 genomes]
rs662296	0.92[EUR][1000 genomes]
rs663283	0.85[ASN][1000 genomes]
rs675565	0.83[ASN][1000 genomes]
rs678862	0.83[ASN][1000 genomes]
rs687163	0.86[ASN][1000 genomes]
rs6936326	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs821443	0.84[ASN][1000 genomes]
rs9348893	0.89[ASN][1000 genomes]
rs9357151	0.89[ASN][1000 genomes]
rs9368729	0.90[ASN][1000 genomes]
rs9380321	0.86[ASN][1000 genomes]
rs9394109	0.89[ASN][1000 genomes]
rs9394115	0.86[ASN][1000 genomes]
rs9394119	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3357042	chr6:11489266-11493964	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3372842	chr6:11489366-11493264	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3396914	chr6:11489566-11493564	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3441435	chr6:11489666-11493664	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11483800-11495000	Weak transcription	Pancreas	Pancrea
2	chr6:11486800-11496000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:11486800-11496800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:11487000-11495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:11487400-11495800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:11487400-11495800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:11491800-11492400	Enhancers	GM12878-XiMat	blood
8	chr6:11491800-11495800	Weak transcription	Fetal Kidney	kidney
9	chr6:11491800-11497200	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:11492000-11492800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:11492000-11493200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:11492000-11493400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:11492000-11493400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:11492000-11493600	Enhancers	NHDF-Ad	bronchial
15	chr6:11492000-11496200	Enhancers	Primary B cells from cord blood	blood
16	chr6:11492000-11498200	Enhancers	A549	lung

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