Variant report

Variant	rs534042
Chromosome Location	chr6:11591829-11591830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11591438..11594542-chr6:11595912..11598544,3	K562	blood:
2	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs538808	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56055084	0.81[EUR][1000 genomes]
rs598907	0.91[ASN][1000 genomes]
rs637564	0.95[ASN][1000 genomes]
rs645198	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs662296	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11587000-11592400	Weak transcription	Liver	Liver
2	chr6:11587200-11592600	Weak transcription	Ovary	ovary
3	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
8	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11590600-11592200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:11590600-11592600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:11590800-11592600	Weak transcription	A549	lung
13	chr6:11591000-11592800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:11591200-11592000	Weak transcription	HSMMtube	muscle
15	chr6:11591200-11592000	Weak transcription	NH-A	brain
16	chr6:11591200-11592400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:11591200-11592400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:11591200-11592600	Weak transcription	Fetal Lung	lung
19	chr6:11591200-11592600	Weak transcription	HSMM	muscle
20	chr6:11591200-11592800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:11591200-11592800	Weak transcription	NHDF-Ad	bronchial
22	chr6:11591200-11592800	Weak transcription	NHLF	lung
23	chr6:11591200-11592800	Weak transcription	Osteobl	bone
24	chr6:11591200-11593000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:11591400-11592200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:11591400-11592400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:11591400-11596600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:11591600-11592000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr6:11591600-11592000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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