Variant report

Variant	rs637564
Chromosome Location	chr6:11596881-11596882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11591438..11594542-chr6:11595912..11598544,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs471560	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs471752	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs483637	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs490466	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs509971	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs519140	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs524159	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs528679	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs534042	0.95[ASN][1000 genomes]
rs539160	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs552681	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs554671	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs555034	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs555742	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs566237	0.84[AMR][1000 genomes]
rs571683	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs573082	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs574254	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs578507	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs581285	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs598907	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs605058	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs628980	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs645198	0.93[ASN][1000 genomes]
rs661055	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs662296	0.92[ASN][1000 genomes]
rs663283	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs675565	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs678862	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs685384	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs687163	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs821443	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9348893	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9380321	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394115	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs637564	TMEM170B	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11593000-11598600	Weak transcription	A549	lung
2	chr6:11593200-11597000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:11593200-11600800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:11593200-11605400	Weak transcription	Right Atrium	heart
5	chr6:11593600-11604600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:11593800-11597600	Weak transcription	Ovary	ovary
7	chr6:11593800-11609800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:11594800-11598000	Weak transcription	Placenta	Placenta
9	chr6:11595200-11597000	Weak transcription	HSMM	muscle
10	chr6:11595200-11598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:11595200-11602400	Weak transcription	HSMMtube	muscle
12	chr6:11596800-11597200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:11596800-11597200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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