Variant report

Variant	rs662296
Chromosome Location	chr6:11588052-11588053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11585369..11588205-chr6:11589273..11592735,3	MCF-7	breast:
2	chr6:11586656..11588418-chr6:12286272..12289815,3	MCF-7	breast:
3	chr6:11585833..11588310-chr6:12287891..12289601,2	MCF-7	breast:
4	chr6:11586620..11588311-chr6:11818479..11820491,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2140110	0.82[EUR][1000 genomes]
rs490466	0.80[ASN][1000 genomes]
rs534042	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs538808	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs555742	0.82[ASN][1000 genomes]
rs56055084	0.92[EUR][1000 genomes]
rs598907	0.98[ASN][1000 genomes]
rs637564	0.92[ASN][1000 genomes]
rs645198	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11586200-11591200	Enhancers	NHLF	lung
2	chr6:11586800-11588200	Active TSS	HSMMtube	muscle
3	chr6:11587000-11589800	Weak transcription	Fetal Lung	lung
4	chr6:11587000-11592400	Weak transcription	Liver	Liver
5	chr6:11587200-11588400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:11587200-11589400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:11587200-11589600	Weak transcription	A549	lung
8	chr6:11587200-11590400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:11587200-11590400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:11587200-11592600	Weak transcription	Ovary	ovary
11	chr6:11587200-11593000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:11587400-11589400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:11587400-11589400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:11587400-11589400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:11587400-11589400	Weak transcription	HUVEC	blood vessel
16	chr6:11587400-11589400	Weak transcription	NHDF-Ad	bronchial
17	chr6:11587400-11589400	Weak transcription	Osteobl	bone
18	chr6:11587400-11589800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:11587400-11590000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:11587400-11591000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:11587400-11592200	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:11587400-11592400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:11587400-11592600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:11587400-11592800	Weak transcription	Placenta	Placenta
25	chr6:11587400-11593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:11587600-11589400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:11587600-11589600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:11587600-11589800	Weak transcription	Fetal Stomach	stomach
29	chr6:11587600-11592800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:11587800-11588400	Active TSS	HSMM	muscle
31	chr6:11587800-11589400	Weak transcription	NH-A	brain

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