Variant report

Variant	rs56063507
Chromosome Location	chr3:105420884-105420885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73854882	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv877307	chr3:105373836-105465189	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv591242	chr3:105373836-105470134	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877308	chr3:105373836-105495841	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877310	chr3:105409321-105495841	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105375800-105464600	Weak transcription	Small Intestine	intestine
2	chr3:105376000-105438200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:105376800-105440000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:105378000-105455400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:105378600-105438600	Weak transcription	Spleen	Spleen
6	chr3:105379000-105437400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:105379200-105440400	Weak transcription	Thymus	Thymus
8	chr3:105388400-105421000	Weak transcription	Gastric	stomach
9	chr3:105389200-105467200	Weak transcription	Stomach Mucosa	stomach
10	chr3:105394200-105438800	Weak transcription	NHEK	skin
11	chr3:105396000-105432600	Weak transcription	Pancreas	Pancrea
12	chr3:105396000-105437200	Weak transcription	Psoas Muscle	Psoas
13	chr3:105396000-105437400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:105396000-105438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:105396000-105438400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:105396200-105430400	Weak transcription	Fetal Brain Male	brain
17	chr3:105400000-105437200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:105401000-105432200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:105401600-105433800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:105405200-105437200	Weak transcription	NHLF	lung
21	chr3:105405800-105421000	Weak transcription	Aorta	Aorta
22	chr3:105407800-105457800	Weak transcription	HepG2	liver
23	chr3:105408400-105440400	Weak transcription	A549	lung
24	chr3:105409000-105427400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:105409000-105441600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:105410800-105437600	Weak transcription	Fetal Heart	heart
27	chr3:105412000-105434000	Weak transcription	HMEC	breast
28	chr3:105412400-105437200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:105412400-105441600	Weak transcription	Brain Substantia Nigra	brain
30	chr3:105412600-105437400	Weak transcription	Dnd41	blood
31	chr3:105415600-105428800	Weak transcription	GM12878-XiMat	blood
32	chr3:105415600-105438000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:105417200-105436800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr3:105417400-105443400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:105417800-105424600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:105418400-105432800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:105418600-105423000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:105418600-105427200	Strong transcription	Osteobl	bone
39	chr3:105418800-105423400	Strong transcription	Placenta	Placenta
40	chr3:105419000-105423800	Strong transcription	HSMM	muscle
41	chr3:105419200-105421400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr3:105419200-105423000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr3:105419200-105423200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:105419200-105423400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr3:105419200-105423800	Strong transcription	Adipose Nuclei	Adipose
46	chr3:105419200-105424000	Strong transcription	NH-A	brain
47	chr3:105419200-105424600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:105419200-105439200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:105419400-105421400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:105419400-105421400	Strong transcription	Liver	Liver

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