Variant report

Variant	rs73854882
Chromosome Location	chr3:105510726-105510727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55857799	1.00[AFR][1000 genomes]
rs56063507	1.00[EUR][1000 genomes]
rs56696279	1.00[AFR][1000 genomes]
rs59347770	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877309	chr3:105373836-105542435	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105478600-105511200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:105482000-105510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:105482000-105511200	Weak transcription	Aorta	Aorta
4	chr3:105482800-105517400	Weak transcription	Fetal Intestine Large	intestine
5	chr3:105483200-105555200	Weak transcription	Placenta	Placenta
6	chr3:105486800-105519000	Weak transcription	Esophagus	oesophagus
7	chr3:105489600-105525400	Weak transcription	Fetal Intestine Small	intestine
8	chr3:105493000-105511200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:105493000-105511200	Weak transcription	Right Atrium	heart
10	chr3:105494400-105516200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:105495400-105517200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:105496400-105510800	Weak transcription	Right Ventricle	heart
13	chr3:105496400-105514000	Weak transcription	Lung	lung
14	chr3:105501800-105516600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:105505000-105527800	Weak transcription	Pancreas	Pancrea
16	chr3:105505000-105548200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:105505200-105511000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:105505600-105517400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:105506000-105510800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr3:105506200-105516000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:105506600-105518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr3:105507000-105511000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:105507000-105511800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:105507200-105511000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:105507200-105511000	Weak transcription	Liver	Liver
26	chr3:105507600-105510800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr3:105507800-105511000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr3:105509000-105512200	Enhancers	Fetal Heart	heart
29	chr3:105509000-105515000	Weak transcription	Fetal Kidney	kidney
30	chr3:105509200-105513800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:105509200-105514000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr3:105509400-105511000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:105509400-105511200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr3:105509400-105511800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:105509400-105512000	Enhancers	NH-A	brain
36	chr3:105509400-105512200	Strong transcription	Primary B cells from cord blood	blood
37	chr3:105509400-105512200	Enhancers	Adipose Nuclei	Adipose
38	chr3:105509400-105512400	Enhancers	NHLF	lung
39	chr3:105509400-105512600	Enhancers	Colon Smooth Muscle	Colon
40	chr3:105509400-105513400	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr3:105509400-105513600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:105509600-105511000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:105509600-105512200	Enhancers	HMEC	breast
44	chr3:105509600-105512400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr3:105509800-105511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:105509800-105511400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr3:105509800-105511400	Weak transcription	Psoas Muscle	Psoas
48	chr3:105509800-105511800	Weak transcription	Left Ventricle	heart
49	chr3:105509800-105512600	Enhancers	HSMM	muscle
50	chr3:105509800-105512800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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