Variant report

Variant	rs56065556
Chromosome Location	chr1:220751136-220751137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:220749131..220751200-chr1:220751279..220752984,2	K562	blood:
2	chr1:220742050..220744695-chr1:220750839..220754765,3	K562	blood:
3	chr1:220749189..220751737-chr1:220755091..220757350,2	K562	blood:
4	chr1:220738520..220740404-chr1:220751038..220753296,2	MCF-7	breast:
5	chr1:220742182..220744105-chr1:220750839..220752590,2	K562	blood:

rs_ID	r²[population]
rs56218702	0.91[AFR][1000 genomes]
rs56243607	0.91[AFR][1000 genomes]
rs56249319	0.91[AFR][1000 genomes]
rs56899288	0.91[AFR][1000 genomes]
rs59619545	0.91[AFR][1000 genomes]
rs59974884	0.91[AFR][1000 genomes]
rs61110719	0.91[AFR][1000 genomes]
rs61471614	0.91[AFR][1000 genomes]
rs61571004	0.91[AFR][1000 genomes]
rs61633203	0.91[AFR][1000 genomes]
rs6668998	0.91[AFR][1000 genomes]
rs6675217	0.91[AFR][1000 genomes]
rs6691543	0.91[AFR][1000 genomes]
rs6699835	0.91[AFR][1000 genomes]
rs6702256	0.91[AFR][1000 genomes]
rs74139762	0.83[AFR][1000 genomes]
rs74139766	0.91[AFR][1000 genomes]
rs74139767	0.91[AFR][1000 genomes]
rs74139768	0.91[AFR][1000 genomes]
rs74139769	0.91[AFR][1000 genomes]
rs74139775	0.91[AFR][1000 genomes]
rs74139776	1.00[AFR][1000 genomes]
rs74139777	1.00[AFR][1000 genomes]
rs74139778	0.91[AFR][1000 genomes]
rs74139779	0.91[AFR][1000 genomes]
rs74139780	0.91[AFR][1000 genomes]
rs74139781	0.91[AFR][1000 genomes]
rs74139782	0.91[AFR][1000 genomes]
rs74139784	0.91[AFR][1000 genomes]
rs74139785	0.91[AFR][1000 genomes]
rs74139786	0.91[AFR][1000 genomes]
rs74139790	0.84[AFR][1000 genomes]
rs74139794	0.91[AFR][1000 genomes]
rs74139799	0.91[AFR][1000 genomes]
rs74139802	0.84[AFR][1000 genomes]
rs74141805	0.91[AFR][1000 genomes]
rs7551173	0.91[AFR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220748000-220755600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:220748000-220762200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:220748200-220752400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:220748200-220762200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:220748200-220769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:220748400-220762400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:220748400-220767200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:220748400-220773200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:220748600-220769800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:220748800-220770400	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:220749000-220752600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:220749000-220767000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:220749800-220751400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:220749800-220799000	Weak transcription	Aorta	Aorta
15	chr1:220750000-220753000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:220750000-220767000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:220750400-220752800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:220750400-220767000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:220751000-220751200	Enhancers	Fetal Brain Female	brain
20	chr1:220751000-220751800	Enhancers	HMEC	breast
21	chr1:220751000-220752000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:220751000-220758600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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