The 2.0 version of rSNPBase

Variant report

Variant rs56899288
Chromosome Location chr1:220757554-220757555
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220748000-220762200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr1:220748200-220762200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:220748200-220769200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:220748400-220762400 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:220748400-220767200 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:220748400-220773200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr1:220748600-220769800 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr1:220748800-220770400 Weak transcription Fetal Muscle Leg muscle
9 chr1:220749000-220767000 Weak transcription Fetal Muscle Trunk muscle
10 chr1:220749800-220799000 Weak transcription Aorta Aorta
11 chr1:220750000-220767000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:220750400-220767000 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr1:220751000-220758600 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr1:220751200-220763200 Weak transcription Fetal Brain Female brain
15 chr1:220751800-220762400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:220751800-220799000 Weak transcription Fetal Stomach stomach
17 chr1:220752400-220762800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr1:220752400-220772200 Weak transcription Fetal Brain Male brain
19 chr1:220752400-220775000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr1:220752600-220762400 Weak transcription Adipose Nuclei Adipose
21 chr1:220752600-220764000 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:220752600-220768800 Weak transcription Esophagus oesophagus
23 chr1:220752600-220808600 Weak transcription Left Ventricle heart
24 chr1:220753000-220763200 Weak transcription Fetal Heart heart
25 chr1:220753200-220766400 Weak transcription HMEC breast
26 chr1:220753400-220778400 Weak transcription NHEK skin
27 chr1:220753800-220762200 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr1:220753800-220767000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:220754000-220759000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
30 chr1:220754800-220764000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:220756000-220767000 Weak transcription Brain Germinal Matrix brain
32 chr1:220756000-220790800 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr1:220756600-220761200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:220756600-220767200 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr1:220756600-220775000 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015