The 2.0 version of rSNPBase

Variant report

Variant rs56249319
Chromosome Location chr1:220768181-220768182
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220748200-220769200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr1:220748400-220773200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr1:220748600-220769800 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr1:220748800-220770400 Weak transcription Fetal Muscle Leg muscle
5 chr1:220749800-220799000 Weak transcription Aorta Aorta
6 chr1:220751800-220799000 Weak transcription Fetal Stomach stomach
7 chr1:220752400-220772200 Weak transcription Fetal Brain Male brain
8 chr1:220752400-220775000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:220752600-220768800 Weak transcription Esophagus oesophagus
10 chr1:220752600-220808600 Weak transcription Left Ventricle heart
11 chr1:220753400-220778400 Weak transcription NHEK skin
12 chr1:220756000-220790800 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr1:220756600-220775000 Weak transcription HUES64 Cell Line embryonic stem cell
14 chr1:220761200-220799200 Weak transcription H1 Cell Line embryonic stem cell
15 chr1:220762000-220771600 Weak transcription Stomach Smooth Muscle stomach
16 chr1:220762600-220768800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr1:220762600-220769000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr1:220762600-220780200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:220764200-220790200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr1:220764400-220779200 Weak transcription Fetal Heart heart
21 chr1:220765000-220768600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:220766000-220769800 Strong transcription Cortex derived primary cultured neurospheres brain
23 chr1:220766200-220771200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr1:220766600-220769600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr1:220766800-220768200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr1:220767000-220768200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:220767000-220768200 Strong transcription Brain Germinal Matrix brain
28 chr1:220767200-220768800 Strong transcription Fetal Brain Female brain
29 chr1:220767400-220768200 Enhancers Muscle Satellite Cultured Cells --
30 chr1:220767400-220768400 Strong transcription Adipose Nuclei Adipose
31 chr1:220767400-220768800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:220767400-220798600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:220767600-220799000 Weak transcription Fetal Muscle Trunk muscle
34 chr1:220767800-220784400 Weak transcription HUES6 Cell Line embryonic stem cell
35 chr1:220767800-220826400 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr1:220768000-220769600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:220768000-220775000 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr1:220768000-220790800 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr1:220768000-220804600 Weak transcription iPS-20b Cell Line embryonic stem cell
40 chr1:220768000-220813800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015