Variant report

Variant	rs56087620
Chromosome Location	chr3:143729481-143729482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513236	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915876	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929030	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766595	1.00[ASN][1000 genomes]
rs55848985	1.00[ASN][1000 genomes]
rs55850911	1.00[ASN][1000 genomes]
rs56153797	1.00[ASN][1000 genomes]
rs56203852	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57585973	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874107	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874108	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874109	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614693	1.00[ASN][1000 genomes]
rs7616037	1.00[ASN][1000 genomes]
rs7622738	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650841	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143699200-143737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:143727400-143730800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:143728000-143731600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:143729200-143729600	Enhancers	Aorta	Aorta
5	chr3:143729200-143731400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:143729400-143729600	Enhancers	Brain Angular Gyrus	brain
7	chr3:143729400-143729600	Enhancers	Left Ventricle	heart
8	chr3:143729400-143729600	Genic enhancers	Ovary	ovary
9	chr3:143729400-143729600	Enhancers	NHLF	lung
10	chr3:143729400-143730000	Enhancers	NH-A	brain
11	chr3:143729400-143730400	Enhancers	HSMM	muscle
12	chr3:143729400-143731000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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