Variant report

Variant	rs73874107
Chromosome Location	chr3:143749329-143749330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10513236	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11915876	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766595	1.00[ASN][1000 genomes]
rs55848985	1.00[ASN][1000 genomes]
rs55850911	1.00[ASN][1000 genomes]
rs56087620	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56153797	1.00[ASN][1000 genomes]
rs56203852	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57585973	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874108	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73874109	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614693	1.00[ASN][1000 genomes]
rs7616037	1.00[ASN][1000 genomes]
rs7622738	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143747000-143749400	Enhancers	Brain Hippocampus Middle	brain
2	chr3:143747600-143750800	Weak transcription	Ovary	ovary
3	chr3:143748400-143750000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:143748400-143750200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:143748600-143751600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:143748800-143750200	Weak transcription	Brain Substantia Nigra	brain
7	chr3:143748800-143750400	Enhancers	Brain Anterior Caudate	brain
8	chr3:143749000-143749400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:143749200-143749800	Weak transcription	GM12878-XiMat	blood
10	chr3:143749200-143750200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:143749200-143750800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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