Variant report

Variant	rs56090946
Chromosome Location	chr11:19212685-19212686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12290229	1.00[EUR][1000 genomes]
rs7102081	1.00[EUR][1000 genomes]
rs72904176	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19176400-19213400	Weak transcription	Psoas Muscle	Psoas
2	chr11:19194600-19213400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:19196200-19213200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:19196200-19213200	Weak transcription	Pancreas	Pancrea
5	chr11:19199000-19212800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:19201800-19212800	Strong transcription	Left Ventricle	heart
7	chr11:19204800-19212800	Strong transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:19211200-19213600	Strong transcription	Right Ventricle	heart
9	chr11:19211600-19213200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:19211800-19212800	Strong transcription	Fetal Muscle Leg	muscle
11	chr11:19211800-19214600	Genic enhancers	Fetal Heart	heart
12	chr11:19212000-19214600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:19212200-19215000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
14	chr11:19212400-19217000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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