Variant report

Variant	rs7102081
Chromosome Location	chr11:19218254-19218255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11025056	1.00[MEX][hapmap]
rs12290229	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1648233	1.00[MEX][hapmap]
rs56090946	1.00[EUR][1000 genomes]
rs72904176	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19213200-19219800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:19213800-19220800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:19214000-19219800	Weak transcription	Left Ventricle	heart
4	chr11:19214000-19220000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:19214000-19220200	Weak transcription	Psoas Muscle	Psoas
6	chr11:19214200-19219800	Weak transcription	Right Ventricle	heart
7	chr11:19215000-19219800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:19215600-19218400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:19216000-19219800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:19216200-19219800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:19216800-19219800	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:19217400-19218800	Enhancers	Hela-S3	cervix
13	chr11:19217600-19219800	Enhancers	Fetal Heart	heart
14	chr11:19218000-19218400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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