Variant report

Variant	rs56091124
Chromosome Location	chr3:80781701-80781702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10049368	1.00[AMR][1000 genomes]
rs17018281	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56059271	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198464	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56802446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57189276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57211378	1.00[AMR][1000 genomes]
rs57495637	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59303804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59448649	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61598826	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764754	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6800151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851790	0.85[AMR][1000 genomes]
rs73852203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854222	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854230	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73854233	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854234	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73854942	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624579	1.00[AMR][1000 genomes]
rs7625164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682002	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877037	chr3:80611818-80811252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80780600-80785600	Enhancers	HUVEC	blood vessel
2	chr3:80781000-80784800	Enhancers	Fetal Intestine Large	intestine
3	chr3:80781400-80782600	Enhancers	Hela-S3	cervix
4	chr3:80781600-80782600	Weak transcription	Fetal Intestine Small	intestine
5	chr3:80781600-80782800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:80781600-80784200	Enhancers	Stomach Mucosa	stomach

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