Variant report

Variant	rs56802446
Chromosome Location	chr3:80796619-80796620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10049368	1.00[AMR][1000 genomes]
rs17018281	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56059271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56091124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198464	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57189276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57211378	1.00[AMR][1000 genomes]
rs57495637	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59303804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59448649	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61598826	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764754	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6800151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73851790	0.85[AMR][1000 genomes]
rs73852203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854221	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854230	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73854233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854234	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73854942	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7614247	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624579	1.00[AMR][1000 genomes]
rs7625164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682002	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877037	chr3:80611818-80811252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv877038	chr3:80781726-80984958	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1846627	chr3:80791380-80912454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80796400-80801600	Weak transcription	Brain Germinal Matrix	brain
2	chr3:80796400-80801800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:80796400-80802200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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