Variant report

Variant	rs57211378
Chromosome Location	chr3:80820709-80820710
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:80820430..80822926-chr3:80823338..80825729,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10049368	1.00[AMR][1000 genomes]
rs17018281	0.85[AMR][1000 genomes]
rs56059271	1.00[AMR][1000 genomes]
rs56091124	1.00[AMR][1000 genomes]
rs56198464	0.85[AMR][1000 genomes]
rs56802446	1.00[AMR][1000 genomes]
rs57189276	1.00[AMR][1000 genomes]
rs57495637	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59303804	1.00[AMR][1000 genomes]
rs59448649	0.85[AMR][1000 genomes]
rs61598826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764754	1.00[AMR][1000 genomes]
rs6800151	1.00[AMR][1000 genomes]
rs73851790	0.85[AMR][1000 genomes]
rs73852203	1.00[AMR][1000 genomes]
rs73854221	1.00[AMR][1000 genomes]
rs73854222	1.00[AMR][1000 genomes]
rs73854230	0.85[AMR][1000 genomes]
rs73854233	1.00[AMR][1000 genomes]
rs73854234	0.85[AMR][1000 genomes]
rs73854942	1.00[AMR][1000 genomes]
rs7614247	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625164	1.00[AMR][1000 genomes]
rs9682002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004115	chr3:80349665-81043308	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv536601	chr3:80349665-81043308	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1067580	chr3:80416729-81043307	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv492220	chr3:80416729-81043307	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1000592	chr3:80422155-81044175	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv527598	chr3:80585455-81250663	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv877038	chr3:80781726-80984958	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1846627	chr3:80791380-80912454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1003078	chr3:80818409-80948129	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv3439229	chr3:80818862-80820710	Active TSS ZNF genes & repeats Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv877039	chr3:80819678-81062618	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80816200-80822200	Active TSS	K562	blood
2	chr3:80817000-80821200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr3:80817400-80820800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:80818000-80820800	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr3:80818400-80820800	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr3:80818600-80820800	Active TSS	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links